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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1983333_1998267_R

Intron Information:

Intron Rank:
151949
Intron Class:
major
Intron Phase:
Intron Coordinates:
1983333 - 1998267
Intron Length:
14935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATCATAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.6
0.51
1.1
76.4
37.5
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
61.5
0.44
1.9
82.08
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029317
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030453
1983015 - 1998569
15555