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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_198656_199022_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198656 - 199022
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATGGAGA
Flanking Amino Acid:
HLHRAVFPEFKQRLDRLVWQ
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
69.6
34.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.8
0.58
0.8
69
31.7
Minor 5ss
32.5
-2
3.3
47.5
42.3
Minor BPS
43.9
-0.4
2
57.16
41.9

Associated Gene:

Gene:
ARHGEF37
Ensembl Gene ID:
ENSAPLG00000010419
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010863
193261 - 201827
8567