About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_200310_200505_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
200310 - 200505

Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGGAGCT

5'SS Class:
strong_major

3'SS Sequence:
TGCTCCCCACCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTCTGAC

U12 Branch Point Sequence:
TGCTCCCCACCA

Flanking Amino Acid:
ETVTPSPVTQPLTAAEERKV

Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.7
0.75
1
72.5
37.3

Major BPS
63.7
0.34
1.2
57
41.8

Major PPT
67.8
0.4
0.9
59.7
36.8

Minor 5ss
31.7
-2.1
3.6
47.8
47.9

Minor BPS
46.2
-0.2
2.1
61.2
44.5

Associated Gene:

Gene:
ARHGEF37

Ensembl Gene ID:

Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

193261 - 201827
8567