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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2029649_2031747_R

Intron Information:

Intron Rank:
149106
Intron Class:
major
Intron Phase:
Intron Coordinates:
2029649 - 2031747
Intron Length:
2099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTCCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.3
0.55
0.9
70.8
38.5
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
71.5
0.75
1.4
82.63
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030916
2029389 - 2060664
31276