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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2031862_2055231_R

Intron Information:

Intron Rank:
149107
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2031862 - 2055231
Intron Length:
23370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGATAT
5'SS Class:
major
3'SS Sequence:
TGAAACAACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
71.5
34.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
49.4
-0
1
40.6
37.8
Minor 5ss
42.1
-0.9
2.9
56.5
47.8
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030916
2029389 - 2060664
31276