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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2047175_2049316_R

Intron Information:

Intron Rank:
149102
Intron Class:
major
Intron Phase:
Intron Coordinates:
2047175 - 2049316
Intron Length:
2142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTGCCTTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
72.6
0.51
0.9
65.8
39.7
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
66.1
0.49
1.8
74.54
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026615
2045959 - 2060664
14706