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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2047175_2055231_R

Intron Information:

Intron Rank:
149109
Intron Class:
major
Intron Phase:
Intron Coordinates:
2047175 - 2055231
Intron Length:
8057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGATAT
5'SS Class:
major
3'SS Sequence:
CTGCCTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTGCCTTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
71.5
34.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
72.6
0.51
0.9
65.8
39.7
Minor 5ss
42.1
-0.9
2.9
56.5
47.8
Minor BPS
66.1
0.49
1.8
74.54
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041085
2045959 - 2060664
14706