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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2049606_2060332_R

Intron Information:

Intron Rank:
149103
Intron Class:
major
Intron Phase:
Intron Coordinates:
2049606 - 2060332
Intron Length:
10727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTGGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.7
0.49
1.1
68.6
42.1
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
58
0.33
1.8
79.06
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026615
2045959 - 2060664
14706