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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2055336_2060332_R

Intron Information:

Intron Rank:
149104
Intron Class:
major
Intron Phase:
Intron Coordinates:
2055336 - 2060332
Intron Length:
4997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCACTTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTCTTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66.9
0.38
1
67.2
32.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
64.5
0.54
2
87.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030176
2054887 - 2106802
51916
ENSAPLT00000041085
2045959 - 2060664
14706
ENSAPLT00000030916
2029389 - 2060664
31276