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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2060452_2106639_R

Intron Information:

Intron Rank:
149105
Intron Class:
major
Intron Phase:
Intron Coordinates:
2060452 - 2106639
Intron Length:
46188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTACTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.7
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85
0.79
0.7
80.9
30.8
Minor 5ss
49.4
-0
2.4
57.9
46.7
Minor BPS
61.3
0.43
1.6
76.03
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030176
2054887 - 2106802
51916