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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2078826_2084488_R

Intron Information:

Intron Rank:
133475
Intron Class:
major
Intron Phase:
Intron Coordinates:
2078826 - 2084488
Intron Length:
5663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGGTTC
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCCTACGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
67.7
38.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
81.3
30.8
Minor 5ss
43.7
-0.7
3
59.1
45.8
Minor BPS
47.9
-0.1
2.2
68.78
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019074
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025532
2077934 - 2084633
6700