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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2078826_2084976_R

Intron Information:

Intron Rank:
133477
Intron Class:
major
Intron Phase:
Intron Coordinates:
2078826 - 2084976
Intron Length:
6151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATTAA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCCTACGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.8
32.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
81.3
30.8
Minor 5ss
32.3
-2
3.1
40
46.1
Minor BPS
47.9
-0.1
2.2
68.78
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019074
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038097
2077934 - 2085004
7071