About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2078826_2106117_R

Intron Information:

Intron Rank:
133478
Intron Class:
major
Intron Phase:
Intron Coordinates:
2078826 - 2106117
Intron Length:
27292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCCTACGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.3
30.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
81.3
30.8
Minor 5ss
29.2
-2.4
3.2
41.3
45.2
Minor BPS
47.9
-0.1
2.2
68.78
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019074
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047765
2077934 - 2107710
29777