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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2085684_2085990_F

Intron Information:

Intron Rank:
125664
Intron Class:
major
Intron Phase:
Intron Coordinates:
2085684 - 2085990
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTATAA
5'SS Class:
major
3'SS Sequence:
TTATTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
66.7
35
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
35.9
-1.6
3.3
47
48.4
Minor BPS
65.5
0.57
1.5
80.29
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017678
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044619
2084705 - 2088706
4002