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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2086068_2088621_F

Intron Information:

Intron Rank:
125665
Intron Class:
major
Intron Phase:
Intron Coordinates:
2086068 - 2088621
Intron Length:
2554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAACTG
5'SS Class:
major
3'SS Sequence:
CATTTGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGCATTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
64.9
41
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.1
0.59
1
66.3
43.7
Minor 5ss
29.5
-2.4
3.2
38.3
46.6
Minor BPS
51.8
0.14
1.5
67.28
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017678
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044619
2084705 - 2088706
4002