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Intron Name: Anas_platyrhynchos_platyrhynchos_14_2113016_2114183_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2113016 - 2114183

Intron Length:

1168

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

CATCCTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTACAT

U12 Branch Point Sequence:

CTTTCCTTCACT

Flanking Amino Acid:

MHRRAGRQEGETNQNSEKN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

77.8

38.7

Major BPS

70.2

0.5

1.1

77.2

Major PPT

79.2

0.66

0.8

73.1

31.4

Minor 5ss

31.6

-2.1

2.7

34.1

41.4

Minor BPS

77.7

0.95

1.7

91.67

38.1

Associated Gene:

Gene:

HMMR

Ensembl Gene ID:

ENSAPLG00000012722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045750

2112776 - 2125890

13115

ENSAPLT00000027358

2112776 - 2125039

12264

ENSAPLT00000013285

2112776 - 2125039

12264