About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2114261_2115107_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2114261 - 2115107
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
GGGCGSLGSMPVSGSLKPRK
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65
0.34
1.2
68.7
40.4
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
HMMR
Ensembl Gene ID:
ENSAPLG00000012722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027358
2112776 - 2125039
12264
ENSAPLT00000013285
2112776 - 2125039
12264
ENSAPLT00000045750
2112776 - 2125890
13115