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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2115189_2115647_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2115189 - 2115647
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATTAAAT
Flanking Amino Acid:
KKKQKTLEKEIRALVKERGE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
75.3
0.57
1
69.8
41.2
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
67
0.61
1.7
82.57
37.5

Associated Gene:

Gene:
HMMR
Ensembl Gene ID:
ENSAPLG00000012722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027358
2112776 - 2125039
12264
ENSAPLT00000013285
2112776 - 2125039
12264
ENSAPLT00000045750
2112776 - 2125890
13115