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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2115837_2116690_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2115837 - 2116690
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCAAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
TRTNELLKSKTALAKQEDME
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
37.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
44.9
-0.6
2.6
57.3
47
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
HMMR
Ensembl Gene ID:
ENSAPLG00000012722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027358
2112776 - 2125039
12264