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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2116792_2117346_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2116792 - 2117346
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TCTTGATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AGTTTCTTGATT
Flanking Amino Acid:
KGKVAELKEKLSATEREKAE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
69.5
41.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80
0.68
0.8
77.7
35.6
Minor 5ss
37.3
-1.4
3.4
59.1
45.4
Minor BPS
72.6
0.79
1.1
81.47
33.7

Associated Gene:

Gene:
HMMR
Ensembl Gene ID:
ENSAPLG00000012722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045750
2112776 - 2125890
13115
ENSAPLT00000027358
2112776 - 2125039
12264
ENSAPLT00000013285
2112776 - 2125039
12264