Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2117422_2118197_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2117422 - 2118197

Intron Length:

776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTCTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAA

U12 Branch Point Sequence:

AATACCTGAATT

Flanking Amino Acid:

EKLLEYITELSSIAETVEKY

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

61.8

0.29

1.1

69.7

35.6

Major PPT

92.7

0.96

0.6

88.1

21.9

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

65.9

0.58

1.4

77.92

37.8

Associated Gene:

Gene:

HMMR

Ensembl Gene ID:

ENSAPLG00000012722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045750

2112776 - 2125890

13115

ENSAPLT00000027358

2112776 - 2125039

12264

ENSAPLT00000013285

2112776 - 2125039

12264