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Intron Name: Anas_platyrhynchos_platyrhynchos_14_2119811_2120401_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2119811 - 2120401

Intron Length:

591

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTTAGTGAA

5'SS Class:

major

3'SS Sequence:

ATTTTTATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GCATTTTTATTT

Flanking Amino Acid:

ELAQMEVKLKGKNAELEQIN

Intron Amino Acid Position:

394

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.2

69.7

36.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

84.1

0.77

0.8

82.9

32.8

Minor 5ss

27.9

-2.5

2.8

24.7

36.8

Minor BPS

52.5

0.16

1.5

64.37

40.9

Associated Gene:

Gene:

HMMR

Ensembl Gene ID:

ENSAPLG00000012722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045750

2112776 - 2125890

13115

ENSAPLT00000027358

2112776 - 2125039

12264

ENSAPLT00000013285

2112776 - 2125039

12264