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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2120519_2121221_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2120519 - 2121221
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
ACTATCATACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
KLGKTLAEFESYKKTTAEEI
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.1
0.25
1
53.2
40.8
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
HMMR
Ensembl Gene ID:
ENSAPLG00000012722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045750
2112776 - 2125890
13115
ENSAPLT00000027358
2112776 - 2125039
12264
ENSAPLT00000013285
2112776 - 2125039
12264