About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2123814_2124079_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2123814 - 2124079
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTGTTCTTAATC
Flanking Amino Acid:
LKEENTHLKQDVSKLRALLA
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
71.8
39.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.3
0.71
0.7
81.5
30.5
Minor 5ss
40.2
-1.1
2.7
50.6
45.7
Minor BPS
74.4
0.74
1.2
74.45
36.6

Associated Gene:

Gene:
HMMR
Ensembl Gene ID:
ENSAPLG00000012722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045750
2112776 - 2125890
13115
ENSAPLT00000027358
2112776 - 2125039
12264
ENSAPLT00000013285
2112776 - 2125039
12264