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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2129794_2130430_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2129794 - 2130430
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTACGGATG
5'SS Class:
major
3'SS Sequence:
CTCATTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTGTTCTCATTT
Flanking Amino Acid:
AVAEAKLELAEDVDIPSRRV
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
58.6
45.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.3
0.5
0.8
65.2
36.1
Minor 5ss
37
-1.5
3.5
53.5
44.6
Minor BPS
49.4
0.03
1.8
67.09
44.5

Associated Gene:

Gene:
MAT2B
Ensembl Gene ID:
ENSAPLG00000012683
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017255
2129366 - 2137858
8493