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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2135787_2136236_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2135787 - 2136236
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
FNLPSSHLRPITDCPVMGAL
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
34.8
-1.7
3.3
49.9
46.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MAT2B
Ensembl Gene ID:
ENSAPLG00000012683
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017255
2129366 - 2137858
8493
ENSAPLT00000013195
2128121 - 2137858
9738