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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2171995_2173670_F

Intron Information:

Intron Rank:
132072
Intron Class:
major
Intron Phase:
Intron Coordinates:
2171995 - 2173670
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.9
0.79
0.7
81.1
30.5
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
53.2
0.18
1.8
76.38
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020961
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030534
2168981 - 2174641
5661
ENSAPLT00000029690
2163942 - 2174641
10700