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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2171995_2182031_F

Intron Information:

Intron Rank:
132076
Intron Class:
major
Intron Phase:
Intron Coordinates:
2171995 - 2182031
Intron Length:
10037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
100
1.24
0.5
100
0
Major PPT
85.3
0.79
0.8
80.7
30.3
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
49.3
-0.1
2
65.16
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020961
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045829
2163942 - 2182157
18216
ENSAPLT00000036393
2163942 - 2182157
18216