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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2265013_2267886_F

Intron Information:

Intron Rank:
145494
Intron Class:
major
Intron Phase:
Intron Coordinates:
2265013 - 2267886
Intron Length:
2874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGATCAGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
55.2
0.24
2.3
79.24
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028432
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040504
2264622 - 2268021
3400