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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2266899_2267886_F

Intron Information:

Intron Rank:
145488
Intron Class:
major
Intron Phase:
Intron Coordinates:
2266899 - 2267886
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGATCAGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
55.2
0.24
2.3
79.24
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028432
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030327
2264622 - 2268021
3400