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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2276454_2282049_F

Intron Information:

Intron Rank:
145492
Intron Class:
major
Intron Phase:
Intron Coordinates:
2276454 - 2282049
Intron Length:
5596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
68.8
0.42
1.1
68.4
36.7
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028432
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037263
2264622 - 2287564
22943