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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_230633_244046_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
230633 - 244046
Intron Length:
13414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTG
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GTGAGCTCACCT
Flanking Amino Acid:
PRRWTPDICKYEVSGEEHLY
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
65.3
46
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
39.3
-1.2
2.8
50
46.3
Minor BPS
43.6
-0.4
2.2
61.66
47.6

Associated Gene:

Gene:
PPARGC1B
Ensembl Gene ID:
ENSAPLG00000009977
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046651
230173 - 255731
25559