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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2323346_2363474_F

Intron Information:

Intron Rank:
149434
Intron Class:
major
Intron Phase:
Intron Coordinates:
2323346 - 2363474
Intron Length:
40129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATATCTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATCTTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
79.6
29.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
65.7
0.35
1
63.5
42.4
Minor 5ss
45.6
-0.5
2.8
59.8
40
Minor BPS
56.5
0.28
2
77.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030409
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021099
2323270 - 2367806
44537