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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2392550_2404970_F

Intron Information:

Intron Rank:
146902
Intron Class:
major
Intron Phase:
Intron Coordinates:
2392550 - 2404970
Intron Length:
12421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCTATTTTCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.2
-0.1
2
67.12
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029123
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046598
2391207 - 2405232
14026