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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2392550_2485237_F

Intron Information:

Intron Rank:
146900
Intron Class:
major
Intron Phase:
Intron Coordinates:
2392550 - 2485237
Intron Length:
92688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGAAATTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TTTTCTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
66.5
0.37
1
62.4
43.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
75.2
0.79
1.3
83.42
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029123
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035934
2390918 - 2486342
95425