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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_244221_246108_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
244221 - 246108
Intron Length:
1888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTGG
5'SS Class:
weak_major
3'SS Sequence:
TTGCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TCGGCCTGATTC
Flanking Amino Acid:
YSTDDSELFQIIDSENEALL
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.7
47.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
83.9
0.76
0.8
81.3
30.7
Minor 5ss
47.7
-0.2
2.9
65.1
46.1
Minor BPS
47.1
-0.2
1.8
54.46
44.2

Associated Gene:

Gene:
PPARGC1B
Ensembl Gene ID:
ENSAPLG00000009977
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046651
230173 - 255731
25559
ENSAPLT00000020124
216171 - 255731
39561
ENSAPLT00000010401
216171 - 255918
39748