Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_253867_255627_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

253867 - 255627

Intron Length:

1761

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

CTGCTGTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CATCCCTCACCC

Flanking Amino Acid:

HFFWTRYADLDCSAEESSLA

Intron Amino Acid Position:

987

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

66.4

45.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

70.1

0.45

0.9

61.1

40.1

Minor 5ss

32.4

-2

2.9

32.4

41.9

Minor BPS

49.6

-0

1.9

61.47

43.4

Associated Gene:

Gene:

PPARGC1B

Ensembl Gene ID:

ENSAPLG00000009977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046651

230173 - 255731

25559

ENSAPLT00000020124

216171 - 255731

39561

ENSAPLT00000010401

216171 - 255918

39748