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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2583689_2586438_F

Intron Information:

Intron Rank:
140072
Intron Class:
major
Intron Phase:
Intron Coordinates:
2583689 - 2586438
Intron Length:
2750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.6
0.76
0.8
80.7
30.1
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041478
2583148 - 2611005
27858