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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2586538_2609797_F

Intron Information:

Intron Rank:
140073
Intron Class:
major
Intron Phase:
Intron Coordinates:
2586538 - 2609797
Intron Length:
23260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
ATTGACTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.3
0.53
0.9
66.7
39.6
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
64.9
0.55
1.6
84.96
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041478
2583148 - 2611005
27858