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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2619872_2656119_F

Intron Information:

Intron Rank:
140592
Intron Class:
major
Intron Phase:
Intron Coordinates:
2619872 - 2656119
Intron Length:
36248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TATGCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTCCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
0.9
77.7
36.3
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
63.1
0.27
1.7
70.09
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025699
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039274
2619699 - 2659678
39980
ENSAPLT00000034065
2619699 - 2656909
37211
ENSAPLT00000032531
2619699 - 2659437
39739
ENSAPLT00000029331
2619699 - 2662828
43130