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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2629762_2656119_F

Intron Information:

Intron Rank:
140588
Intron Class:
major
Intron Phase:
Intron Coordinates:
2629762 - 2656119
Intron Length:
26358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TATGCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTCCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
0.9
77.7
36.3
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
63.1
0.27
1.7
70.09
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025699
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021785
2626266 - 2760938
134673