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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2656173_2656659_F

Intron Information:

Intron Rank:
140597
Intron Class:
major
Intron Phase:
Intron Coordinates:
2656173 - 2656659
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACCTATTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
47.4
-0.2
1.7
53.61
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025699
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034065
2619699 - 2656909
37211