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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2737206_2760294_F

Intron Information:

Intron Rank:
140590
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2737206 - 2760294
Intron Length:
23089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTAATTAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TGTGACCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
59.3
0.21
1
54.8
39
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
51.9
0.14
2
74.6
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025699
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021785
2626266 - 2760938
134673