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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2744037_2773261_F

Intron Information:

Intron Rank:
149426
Intron Class:
major
Intron Phase:
Intron Coordinates:
2744037 - 2773261
Intron Length:
29225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
GACACTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
70.8
0.47
0.9
65.7
40.5
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
81
0.97
1
84.56
27.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030404
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021453
2743965 - 2774494
30530