Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2809246_2816505_R

Intron Information:

Intron Rank:

131583

Intron Class:

major

Intron Phase:

Intron Coordinates:

2809246 - 2816505

Intron Length:

7260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTTT

U12 Branch Point Sequence:

TTTTTTTTGCTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

1.1

79.9

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

72.5

0.51

0.9

41.2

Minor 5ss

46.1

-0.4

2.8

65.3

45.9

Minor BPS

46.8

-0.1

3.4

81.5

34.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018423

2801609 - 2816684

15076