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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_28464_28543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28464 - 28543
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
CCCTTTGTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAC
U12 Branch Point Sequence:
CCTTTGTTGAAG
Flanking Amino Acid:
GCGGARRTLAWQGRADRMST
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
59.7
44.9
Major BPS
61
0.27
1.2
55.4
41.7
Major PPT
69
0.43
1.1
69.9
34.3
Minor 5ss
35.8
-1.6
3
50.6
45.4
Minor BPS
45
-0.5
2.2
50.29
44.4

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013019
28337 - 69087
40751