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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2861500_2862818_R

Intron Information:

Intron Rank:
129773
Intron Class:
major
Intron Phase:
Intron Coordinates:
2861500 - 2862818
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTGATTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATACCTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.4
0.44
1
65
41
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
79
0.89
1.1
80.7
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017005
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037980
2860298 - 2862870
2573