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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2871689_2873078_F

Intron Information:

Intron Rank:
129052
Intron Class:
major
Intron Phase:
Intron Coordinates:
2871689 - 2873078
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCAAC
5'SS Class:
major
3'SS Sequence:
TGTTTAAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTCTGTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.3
65
41.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
65.6
0.35
1.1
60.7
43
Minor 5ss
41.2
-1
2.6
51.6
45.2
Minor BPS
60
0.31
1.9
71.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019407
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043382
2870149 - 2873549
3401