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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2932671_2937199_R

Intron Information:

Intron Rank:
135346
Intron Class:
major
Intron Phase:
Intron Coordinates:
2932671 - 2937199
Intron Length:
4529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTATT
5'SS Class:
major
3'SS Sequence:
ATCTGGTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAACTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
78.1
35.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69
0.43
0.9
62.3
39.2
Minor 5ss
48
-0.2
2.5
65.6
40.5
Minor BPS
70.5
0.72
1.2
79.26
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020232
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040484
2932482 - 2939232
6751