Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_2957057_3086220_F

Intron Information:

Intron Rank:

126875

Intron Class:

major

Intron Phase:

Intron Coordinates:

2957057 - 3086220

Intron Length:

129164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

AGTCTTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TGTGCTTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.5

1.12

0.6

90.6

20.3

Major BPS

77.7

0.69

83.3

27.7

Major PPT

75.8

0.58

68.6

41.6

Minor 5ss

36.3

-1.6

3.3

47.2

Minor BPS

59.1

0.28

1.9

71.5

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017394

2956857 - 3087110

130254